New publication alert!
'Making waves: Enhancing pollutant biodegradation via rational engineering of microbial consortia'
https://www.sciencedirect.com/science/article/pii/S004313542301196X?via%3Dihub

New publication alert!

'Systematic Handling of Environmental Fate Data for Model Development─Illustrated for the Case of Biodegradation Half-Life Data'
https://pubs.acs.org/doi/10.1021/acs.estlett.3c00526

New data package: EAWAG-SLUDGE !

EAWAG-SLUDGE contains biotransformation data from activated sludge experiments extracted from 27 scientific articles, including our own paper by Trostel et al. (2023)

https://envipath.org/package/7932e576-03c7-4106-819d-fe80dc605b8a

enviPath was first published in 2016. Since then, we added heaps of functionality and updates, so we decided to summarize it all in an update paper. The preprint is now out, read it here!  

enviPath now has three reviewed data sets, reaction links to EC numbers, we improved the prediction engine both in prediction performance and speed, we added a new holistic pathway-based evaluation, implemented a tailored applicability domain,  and added heaps of additional technical improvements. You can test the improvements online at https://envipath.org.

New publication alert!

“enviRule: an end-to-end system for automatic extraction of reaction patterns from environmental contaminant biotransformation pathways”https://academic.oup.com/bioinformatics/article/39/7/btad407/7206883?login=true

New publication alert!

‘Combining predictive and analytical methods to elucidate pharmaceutical biotransformation in activated sludge’
https://pubs.rsc.org/en/content/articlelanding/2023/EM/D3EM00161J

Throwback Tuesday! The whole enviPath team was present at the International Conference on Chemistry and the Environment 2023 in Venice. We organized a workshop around the enviPath platform, featuring talks regarding databases, predictive models, and applications of enviPath.

Throwback Tuesday! As part of the enviPath+ project, we aim to bring the enviPath platform to a new level. We held a scoping workshop in July to understand how to best meet the needs of our users and collaborators. We thank the participants for their valuable inputs!

We deployed a new version of enviPath! Heaps of updates in the backend, enviPath now should run faster and more smooth. We also worked on our python client. You can now do
pip install enviPath-python
and access all functionality of enviPath directly from within python, check our repository for more details - https://github.com/enviPath/enviPath-python.

Our new automatic rule extraction tool enviRule - extract transformation rules directly from your data set. Soon available in enviPath:

https://doi.org/10.1093/bioinformatics/btad407